interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF A TERNARY SAP-1/SRF/C-FOS SRE DNA COMPLEX
referenceY.MO et al. J.MOL.BIOL. V. 314 495 2001
sourceHOMO SAPIENS
experimentX-ray (resolution=3.19, R-factor=?)
structural superfamily"Winged helix" DNA-binding domain;SRF-like;
reference complex1bc8_C 1k6o_B
links to other resourcesPDBSum NPIDB BIPA PDIdb DNAproDB
protein sequence
interface signatureKRRY/TRSK/TRYK

Estimated binding specificities ?

readout + contactlogo
# IC=19.172 IC/col=1.065 n_of_columns=18 specificity:   
A |  96   0   0  96   4  24   0   4   0  91   0  92   4   0  82   0   6  84
C |   0   0   0   0   4  24   0  82  96   4   0   4   4   0   6   0   4   4
G |   0  96  96   0   4  24   0   4   0   1   0   0   6   0   4  96  82   4
T |   0   0   0   0  84  24  96   6   0   0  96   0  82  96   4   0   4   4
scan!

home
updated Wed May 27 14:31:14 2020