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legend  pdf

structure nameYEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
(PROTEIN MCM1 TRANSCRIPTIONAL REGULATOR)
referenceS.TAN et al. NATURE V. 391 660 1998
sourceSACCHAROMYCES CEREVISIAE
experimentX-ray (resolution=2.25, R-factor=0.240)
structural superfamilySRF-like;
sequence familySRFtype transcription factor DNAbinding a;
multimeric complexes1mnm_ABCD
links to other resourcesPDBSum NPIDB BIPA PDIdb DNAproDB
protein sequence
interface signatureRTVK

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |   0  57   0  13
C |   0  13   0  13
G |   0  13  96  54
T |  96  13   0  16
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: MCM1
GGAAAPubMed1mnm_ABCD(8.45e-05)
CCTAATTAGGPubMed1mnm_A(4.11e-03), 1mnm_ABCD(1.19e-02)
CCCTAAAAGGPubMed1mnm_A(4.11e-03)

Dendrogram of similar interfaces ?

matrix format
  
  --RTTT--VTKG   L            +-1mnm_A    
                     +--------1 
  RA----YA--KG   L   !        +-1hbx_D    
                   --3 
  RT--------KA       !   +------1n6j_A    
                     +---2 
  RT--------KA           +------1egw_B    
                   

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updated Sat Sep 28 22:44:22 2019