1tqe_PQ : 3D-footprint complex

structure name	MECHANISM OF RECRUITMENT OF CLASS II HISTONE DEACETYLASES BY MYOCYTE ENHANCER FACTOR-2
reference	A.HAN et al. J.MOL.BIOL. V. 345 91 2005
source	HOMO SAPIENS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	SRF-like;
reference complex	1n6j_A
links to other resources	NPIDB PDIdb DNAproDB
protein sequence	> 1tqe_P interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr > 1tqe_Q interface=2,22, gRkkiqisrildqrnrqvtftKrkfglmkkayelsvlcdceialiifnsanrlfqyastdmdrvllkyteysephesrtntdiletlkrr
interface signature	RK/RK

Estimated binding specificities ?

readout + contact

# IC=4.475 IC/col=0.447 n_of_columns=10

specificity:

A |  13   0  54  24  24  24  24  24  96   0
C |  13   0  13  24  24  24  24  24   0   0
G |  13   0  16  24  24  24  24  24   0  96
T |  57  96  13  24  24  24  24  24   0   0

scan!

home
updated Wed Jul 8 17:39:36 2020