interface graph thumbnail
legend  pdf

structure nameRHODOBACTER SPHAEROIDES ARGONAUTE IN COMPLEX WITH GUIDE RNA/TARGET DNA HETERODUPLEX
(UNCHARACTERIZED PROTEIN)
referenceT.MIYOSHI et al. NAT COMMUN V. 7 11846 2016
sourceRHODOBACTER SPHAEROIDES
experimentX-ray (resolution=2.00, R-factor=0.184)
structural superfamilyRibonuclease H-like;
sequence familyPiwi domain 478;
reference complex6d92_F
links to other resourcesPDBSum NPIDB BIPA PDIdb DNAproDB
protein sequence
interface signaturePWKYYSYTNRRDRSQLKSLP

Estimated binding specificities ?

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# IC=7.099 IC/col=0.418 n_of_columns=17 specificity:   
A |   0  54  24  24  24  24  24   0  24  24   0  24  24  13  24  96  96
C |   0  16  24  24  24  24  24   0  24  24   0  24  24  16  24   0   0
G |  96  13  24  24  24  24  24   0  24  24  96  24  24  54  24   0   0
T |   0  13  24  24  24  24  24  96  24  24   0  24  24  13  24   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  PGWGKGYAYA----------------SA--YATA--NART----DTRASAQALAKG--------SA--LAPA----   L              +-------------5awh_A    
                                                                                              +-2 
  ----TT--------------------KCFC------------------------------LG----YCTC------   L            ! !  +----------5ux0_A    
                                                                                              ! +--1 
  --RT--------MT--RT----NT----HC--RG--NG----RA--DG--------FCRG--RTRGFCAGFG----   L   +--------4    +----------4ncb_B    
                                                                                     !        ! 
  ----------IA--TT--YT----ITNA--FAYTDANT--------------------------------------       !        ! +--------------2w42_A    
                                                                                   --5        +-3 
  --------------------NT------------------------------------------------------       !          +--------------5g5t_A    
                                                                                     ! 
  ----------------------------------------QI------------------------------QGKG       +------------------------2w36_A    
                                                                                   

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updated Wed Sep 12 04:06:51 2018